Dear all,
I have a problem of using TOPHAT:
[Fri Jul 22 17:37:28 2011] Beginning TopHat run (v1.3.1)
-----------------------------------------------
[Fri Jul 22 17:37:28 2011] Preparing output location ./tophat_out/
[Fri Jul 22 17:37:28 2011] Checking for Bowtie index files
[Fri Jul 22 17:37:28 2011] Checking for reference FASTA file
[Fri Jul 22 17:37:28 2011] Checking for Bowtie
Bowtie version: 0.12.7.0
[Fri Jul 22 17:37:28 2011] Checking for Samtools
Samtools Version: 0.1.17
[Fri Jul 22 17:37:28 2011] Generating SAM header for test_ref
[Fri Jul 22 17:37:28 2011] Preparing reads
format: fastq
quality scale: phred33 (default)
Error locating program: prep_reads
I have a problem of using TOPHAT:
[Fri Jul 22 17:37:28 2011] Beginning TopHat run (v1.3.1)
-----------------------------------------------
[Fri Jul 22 17:37:28 2011] Preparing output location ./tophat_out/
[Fri Jul 22 17:37:28 2011] Checking for Bowtie index files
[Fri Jul 22 17:37:28 2011] Checking for reference FASTA file
[Fri Jul 22 17:37:28 2011] Checking for Bowtie
Bowtie version: 0.12.7.0
[Fri Jul 22 17:37:28 2011] Checking for Samtools
Samtools Version: 0.1.17
[Fri Jul 22 17:37:28 2011] Generating SAM header for test_ref
[Fri Jul 22 17:37:28 2011] Preparing reads
format: fastq
quality scale: phred33 (default)
Error locating program: prep_reads
Comment