Hi all,
I just recently trying to use SOAP denovo-trans for de novo assembly of a non-model species. I did try to run SOAP-trans but i'm kind of confuse about the options in the config file.
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3) asm_flags
This indicator decides in which part(s) the reads are used. It takes value 1(only contig assembly), 2 (only scaffold assembly), 3(both contig and scaffold assembly).
---------------
Which to choose in my case ? I have single end reads file, with read length ranging from 30-300
Any suggestions
I just recently trying to use SOAP denovo-trans for de novo assembly of a non-model species. I did try to run SOAP-trans but i'm kind of confuse about the options in the config file.
---------------
3) asm_flags
This indicator decides in which part(s) the reads are used. It takes value 1(only contig assembly), 2 (only scaffold assembly), 3(both contig and scaffold assembly).
---------------
Which to choose in my case ? I have single end reads file, with read length ranging from 30-300
Any suggestions
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