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Old 08-14-2019, 12:08 PM   #1
jinfang
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Location: lincoln

Join Date: Jul 2019
Posts: 1
Angry gff2gbSmall

Hi, everyone.
I am in trouble converting gff format file to genbank format.

The gff format file looks like:
Scaffold_15;HRSCAF=18| StringTie| transcript| 1| 558|1000| .| .| gene_id "STRG.1"; transcript_id "STRG.1.1"; cov "11.043011"; FPKM "0.745167"; TPM "1.132539";
Scaffold_15;HRSCAF=18| StringTie| exon| 1| 558|1000| .| .| gene_id "STRG.1"; transcript_id "STRG.1.1"; exon_number "1"; cov "11.043011";

which is generated by StringTie.

The command is
gff2gbSmallDNA.pl stringtie.gff gene.fasta stringtie.gb


However, I got nothing in stringtie.gb.

Anyone guys who know why I got an empty file.

Thanks.
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augustus, genbank, gff, gff2gbsmalldna.pl, stringtie

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