Hi,
I've recently downloaded and started running maq-0.7.1 instead of maq-0.6.6. All input files are the same however when i run cns2snp on it's own or through the easyrun script program i get a 12-column output file instead of the usual 9-column file, has anyone else found this or know why this happens?
(I've also tried running the maq.pl demo command with the same result)
Example of output:
chr1 27077 G K 204 119 1 63 62 G 71 T
chr1 27126 T Y 219 141 1 63 62 T 99 C
chr1 27754 C Y 232 139 1 61 62 C 67 T
Many thanks for any help you can give me,
Elaine
I've recently downloaded and started running maq-0.7.1 instead of maq-0.6.6. All input files are the same however when i run cns2snp on it's own or through the easyrun script program i get a 12-column output file instead of the usual 9-column file, has anyone else found this or know why this happens?
(I've also tried running the maq.pl demo command with the same result)
Example of output:
chr1 27077 G K 204 119 1 63 62 G 71 T
chr1 27126 T Y 219 141 1 63 62 T 99 C
chr1 27754 C Y 232 139 1 61 62 C 67 T
Many thanks for any help you can give me,
Elaine
Comment