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01-31-2014, 02:08 AM
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#1 |
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Member
Location: UK Join Date: Aug 2009
Posts: 38
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How to check quality of SNPs
After running my SNP calling, what are the things i can check to see that my results are good quality? And i didnt do any sislly mistakes?
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01-31-2014, 04:44 AM
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#2 | |
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Member
Location: Toronto Join Date: Jan 2011
Posts: 30
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Quote:
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02-03-2014, 04:53 AM
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#3 |
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Senior Member
Location: Budapest Join Date: Mar 2010
Posts: 329
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You can also check the alignment in a genome browser. Additional informations (known phenotype, trio data, etc) also can help to find mistakes.
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| Tags |
| quality control, quality filtering, snp, snp analysis, snp calling |
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