BFAST fasta2brg -f filename

kursuni · 05-10-2011, 12:59 PM

Hi,

I'm working on my thesis work and I'm trying to run BFAST software for aligning FASTQ datasets. I'm getting error written below. and the command is;
> bfast fasta2brg -f filename

The error is;
________________________________________________________________
****************
Checking input parameters supplied by the user ...
Validating fastaFileName SRR035022_1.filt.fastq.
Input arguments look good!
****************
Printing Program Parameters:
programMode: [ExecuteProgram]
fastaFileName: SRR035022_1.filt.fastq
space: [NT Space]
timing: [Not Using]
******************
Reading from SRR035022_1.filt.fastq.
********************
In function "RGBinaryRead": Fatal Error[OpenFileError]. Variable/Value: SRR035022_1.filt.fastq.
Message: Could not open file for reading.
The file stream error was:: Value too large for defined data type
***** Exiting due to errors *****
_____________________________________________________________

I couldnt figure out what the problem is...

Can you tell me what I'm doing wrong ?

Thanks in advance...

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05-10-2011, 12:59 PM	#1
kursuni Member Location: Hoboken, NJ Join Date: May 2011 Posts: 15	BFAST fasta2brg -f filename Hi, I'm working on my thesis work and I'm trying to run BFAST software for aligning FASTQ datasets. I'm getting error written below. and the command is; > bfast fasta2brg -f filename The error is; ________________________________________________________________ ************** Checking input parameters supplied by the user ... Validating fastaFileName SRR035022_1.filt.fastq. Input arguments look good! ************ Printing Program Parameters: programMode: [ExecuteProgram] fastaFileName: SRR035022_1.filt.fastq space: [NT Space] timing: [Not Using] ************** Reading from SRR035022_1.filt.fastq. **************** In function "RGBinaryRead": Fatal Error[OpenFileError]. Variable/Value: SRR035022_1.filt.fastq. Message: Could not open file for reading. The file stream error was:: Value too large for defined data type * Exiting due to errors *** _____________________________________________________________ I couldnt figure out what the problem is... Can you tell me what I'm doing wrong ? Thanks in advance...