SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
BFAST - Help cutcopy11 SOLiD 17 10-17-2013 08:12 AM
BFAST fasta2brg help Esther Bioinformatics 4 05-10-2011 01:29 PM
BFAST bfast.submit.pl configuration epigen Bioinformatics 1 03-18-2011 07:51 AM
BFAST thanks you for your help! (was: ... needs your help) nilshomer Bioinformatics 5 04-21-2010 08:29 PM
Bfast jsun529 Bioinformatics 19 11-12-2009 09:32 AM

Reply
 
Thread Tools
Old 05-10-2011, 12:59 PM   #1
kursuni
Member
 
Location: Hoboken, NJ

Join Date: May 2011
Posts: 15
Default BFAST fasta2brg -f filename

Hi,

I'm working on my thesis work and I'm trying to run BFAST software for aligning FASTQ datasets. I'm getting error written below. and the command is;
> bfast fasta2brg -f filename

The error is;
________________________________________________________________
****************
Checking input parameters supplied by the user ...
Validating fastaFileName SRR035022_1.filt.fastq.
Input arguments look good!
****************
Printing Program Parameters:
programMode: [ExecuteProgram]
fastaFileName: SRR035022_1.filt.fastq
space: [NT Space]
timing: [Not Using]
******************
Reading from SRR035022_1.filt.fastq.
********************
In function "RGBinaryRead": Fatal Error[OpenFileError]. Variable/Value: SRR035022_1.filt.fastq.
Message: Could not open file for reading.
The file stream error was:: Value too large for defined data type
***** Exiting due to errors *****
_____________________________________________________________


I couldnt figure out what the problem is...

Can you tell me what I'm doing wrong ?

Thanks in advance...
kursuni is offline   Reply With Quote
Reply

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 05:55 AM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2021, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO