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Thread Tools |
08-19-2013, 06:55 PM
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#1 |
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Junior Member
Location: China Join Date: May 2013
Posts: 2
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how to use the *.bam data to get the fasta file
Hi everyone,
I'm a beginner in RNA-seq analysis. I hope I would be able to get some help even though my question sounds very basic. I wonder if there's any software that can convert *.bam or *.gtf format directly to the fasta file format. I've searched the question but got nothing. Thanks so much!! |
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08-19-2013, 09:30 PM
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#2 |
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Senior Member
Location: Australia Join Date: Jul 2013
Posts: 119
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There are some tools there, check this post.
http://seqanswers.com/forums/showthread.php?t=7061 And I like bamtool: Bamtools (http://github.com/pezmaster31/bamtools) |
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08-19-2013, 11:09 PM
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#3 |
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Junior Member
Location: China Join Date: May 2013
Posts: 2
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Thanks, arkilis! I will check the usage of samtools and bamtools.
Thank you very much! |
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