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Old 10-26-2013, 02:34 AM   #1
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Location: Norway

Join Date: Aug 2013
Posts: 266
Default The road after DESeq2 vs edgeR vs Cuffdiff results

After great help from the community, special thanks to dryan, Simon Anders and Michael Love, I know have my comparison of edgeR, DESeq2 and Cuffdiff.

For the interested:

Different treatment effect on groups Treatment effect Group effect
DEseq2 0 85 4500
edgeR 0 600 4006
Cuffdiff NA 199 1890

The question is; where does the road go from this?

Im thinking taking the intersect, making Venn diagram, maybe qPCR, GAGE analysis?

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