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Thread | Thread Starter | Forum | Replies | Last Post |
Trimming Nextera XT Sequence Data | cheezemeister | Bioinformatics | 3 | 02-18-2015 11:50 PM |
How to blast a transposon sequence to a MiSeq transposon library | helelein | Bioinformatics | 5 | 07-22-2014 10:52 AM |
Nextera XT index sequence | rpandit | Illumina/Solexa | 1 | 03-18-2013 12:03 PM |
Sequence transposon flanking region | Akira | Sample Prep / Library Generation | 8 | 03-18-2012 07:53 AM |
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#1 |
Junior Member
Location: France Join Date: May 2016
Posts: 2
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Hi everyone,
it's could be interested for me to obtain the the entire Transposon sequence used in the NexteraŽ XT DNA Library Prep. Can anybody help me? Thanks |
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#2 |
Senior Member
Location: Purdue University, West Lafayette, Indiana Join Date: Aug 2008
Posts: 2,317
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It is Tn5.
-- Phillip |
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#3 |
Junior Member
Location: France Join Date: May 2016
Posts: 2
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Thansk for your response. The entire 5000 bp sequence ?
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#4 |
Senior Member
Location: Purdue University, West Lafayette, Indiana Join Date: Aug 2008
Posts: 2,317
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Wait. What do you mean by "transposon"? The protein part is pretty much Tn5, as I understand it, with maybe a couple of minor mutations. The DNA part is not, of course. The 5 kb DNA transposon is replaced with non-connected short sequences containing mainly the cis-regulatory sequence sufficient to cause recognition (binding) by the transposase.
Illumina provides part (or all?) of those sequences in the Illumina Adapter Sequence document: http://support.illumina.com/download...ce-letter.html -- Phillip |
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