Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
wgs assembler Rui Guo Bioinformatics 0 05-28-2016 01:27 AM
Best way to compare DEG between de novo pipeline and Cufflinks pipeline lucasmiguel Bioinformatics 0 08-28-2014 07:20 PM
Suspiciously low read numbers with shotgun pipeline compared to amplicon pipeline Krisztab 454 Pyrosequencing 0 03-27-2014 08:05 AM
Looking for the right WGS simulator oiiio Bioinformatics 5 07-20-2012 11:59 AM

Thread Tools
Old 11-06-2018, 12:21 PM   #1
Junior Member
Location: USA

Join Date: Nov 2018
Posts: 1
Default Has anyone used Pathoscope pipeline for wgs?

Tool link here:

I'm trying to process some WGS fastq files. I'm not clear on on the process as a whole. I have run PathoQC to derep and I now have dereplicated fastq files. I'm not sure how I figure out my TaxonID for PathoLib.

I'm interested in identifying bacteria and distributions of the bacteria. How do I go about that?
markiv is offline   Reply With Quote


Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 10:27 AM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2021, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO