Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
Best tool to find gene variants in metagenome data vsnishtala Metagenomics 2 08-24-2017 03:34 PM
Tool to find splice variants alex_ander RNA Sequencing 0 04-02-2017 11:29 PM
tool to find how many counts for each sequence lyw1 Bioinformatics 58 05-01-2015 07:01 PM
Is there a tool to find if the gene ends are covered by RNAseq reads? capricy Bioinformatics 2 03-09-2015 02:36 AM

Thread Tools
Old 06-03-2019, 04:40 PM   #1
Junior Member
Location: California

Join Date: Jun 2019
Posts: 2
Default Tool to find publications related to a specific gene

Hello, I am looking for a tool where I can submit a list of gene names and get back relevant publications for each gene. I remember hearing about such programs in passing, but can't seem to find one. I have tried using NCBI Batch Entrez with little luck. Thanks!!
pallascat is offline   Reply With Quote
Old 06-05-2019, 08:50 PM   #2
Location: Oxford

Join Date: Feb 2010
Posts: 16

may DAVID ( 'gene report' do the job?
middlemale is offline   Reply With Quote
Old 06-06-2019, 04:27 AM   #3
Senior Member
Location: East Coast USA

Join Date: Feb 2008
Posts: 7,089

You can use Entrezdirect utilities to query Pubmed database.

$ esearch -db pubmed -query "BRCA2 [GENE]" | esummary -format docsum | xtract -pattern DocumentSummary -element Title,FullJournalName,ELocationID

Understanding Factors Associated with Uptake of BRCA1/2 Genetic Testing among Orthodox Jewish Women in the USA Using a Mixed-Methods Approach.  Public health genomics  doi: 10.1159/000499852
Novel Germline Mutations of BRCA1 and BRCA2 in Korean Familial Breast Cancer Patients.  Chonnam medical journal doi: 10.4068/cmj.2019.55.2.99
Clinical characteristics and outcomes in elderly women with BRCA1 and BRCA2 mutations.  Gynecologic oncology    pii: S0090-8258(19)31261-2. doi: 10.1016/j.ygyno.2019.05.017
GenoMax is offline   Reply With Quote
Old 06-06-2019, 12:03 PM   #4
Junior Member
Location: California

Join Date: Jun 2019
Posts: 2

these work great, thanks!!!
pallascat is offline   Reply With Quote

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 02:31 PM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2021, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO