|
|
|
|
|||||||
Similar Threads
|
||||
| Thread | Thread Starter | Forum | Replies | Last Post |
| Tool to find publications related to a specific gene | pallascat | Bioinformatics | 3 | 06-06-2019 12:03 PM |
| Compile FASTA file - search for multiple genome names in protein database | westgigo | General | 0 | 08-05-2018 12:41 PM |
| How can Cuffnorm output give gene names in addition to gene id from input GTF file | yaseen.ladak | RNA Sequencing | 1 | 05-05-2016 07:15 AM |
| how to convert UCSC gene names to gene symbol | gigigou | Bioinformatics | 5 | 05-19-2015 05:23 AM |
| converting UCSC gene names to Hugo Symbol names | efoss | Bioinformatics | 2 | 07-16-2011 01:41 PM |
 |
|
|
Thread Tools |
05-26-2020, 10:12 AM
|
#1 |
|
Junior Member
Location: Germany Join Date: May 2020
Posts: 6
|
Database containing links between PubMed-Publications and Gene Names
Does a database exist which contains links between PubMed-Publications and Gene Names? Use Case: I want to find all relevant PubMed-Publications (PubMed-Ids) for a specific Gene Name. Many thanks and best regards.
|
|
|
|
05-26-2020, 10:35 AM
|
#2 |
|
Junior Member
Location: Germany Join Date: May 2020
Posts: 6
|
Example: Get all publications for Cdc45 (ENSMUSG00000000028)
|
|
|
|
|
05-26-2020, 10:46 AM
|
#3 |
|
Senior Member
Location: East Coast USA Join Date: Feb 2008
Posts: 7,087
|
You can check Entrezdirect from NCBI. Use it to do pubmed database searches like this.
Code:
esearch -db pubmed -query "CDC45 [GENE]" | efetch -format abstract |
|
|
|
|
05-26-2020, 11:43 AM
|
#4 |
|
Junior Member
Location: Germany Join Date: May 2020
Posts: 6
|
Is it also possible to do the query as HTTP request?
Many Thanks. |
|
|
|
|
05-26-2020, 01:07 PM
|
#5 |
|
Senior Member
Location: East Coast USA Join Date: Feb 2008
Posts: 7,087
|
Yes it should be possible. Take a look at this page.
|
|
|
|
|
| Tags |
| pubmed |
| Thread Tools | |
|
|
