Hi all,
I'm confused about the results I get when I map the reads back to the contigs from Abyss. There are a number of contigs where the majority of reads have a different base than the contig at a given position. I don't understand how the assembler would assign a base to a position if it is not supported by the reads.
Thanks for any explanations.
Cheers,
BD
I'm confused about the results I get when I map the reads back to the contigs from Abyss. There are a number of contigs where the majority of reads have a different base than the contig at a given position. I don't understand how the assembler would assign a base to a position if it is not supported by the reads.
Thanks for any explanations.
Cheers,
BD
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