I hope this is relevant to the discussions here.
I am working on a metagenome project and have genome sequences of several strains of a bacteria species, un-assembled, but in contig reads. I used the mugsy program to align them and I have been trying to find a tool to create a tree out of the MAF format file I generated, but I am having issues because of the nature of the original sequences being in contigs rather than assembled.
I am hoping someone jas worked with unassembled genomes with contig reads and could be able to point me to how I could generate an acceptable multi-alignment format from the data
Thanks as always.
mez.
I am working on a metagenome project and have genome sequences of several strains of a bacteria species, un-assembled, but in contig reads. I used the mugsy program to align them and I have been trying to find a tool to create a tree out of the MAF format file I generated, but I am having issues because of the nature of the original sequences being in contigs rather than assembled.
I am hoping someone jas worked with unassembled genomes with contig reads and could be able to point me to how I could generate an acceptable multi-alignment format from the data
Thanks as always.
mez.
Comment