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Old 03-14-2013, 05:35 PM   #1
xfh
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Post what tools could plot a picture like this

Dear everyone,

I want to know how this kind picture is plotted, could you help me? Just mark the target regions on each chromosome.

thank you.
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Old 03-14-2013, 08:02 PM   #2
BENM
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It is most likely plotted by PERL GD module. R, gnuplot, python mathplotlib also can do it.
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Old 03-15-2013, 12:12 AM   #3
simonandrews
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You could make something pretty similar in seqmonk. The genome view window can plot out sets of positions and export them as SVG.

This screenshot shows something similar, but not exactly the same.
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Old 03-15-2013, 01:00 AM   #4
xfh
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Default get it, thank you.

Quote:
Originally Posted by BENM View Post
It is most likely plotted by PERL GD module. R, gnuplot, python mathplotlib also can do it.
get it, thank you.
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Old 03-15-2013, 01:01 AM   #5
xfh
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Default this tool is very good, thank you very much.

Quote:
Originally Posted by simonandrews View Post
You could make something pretty similar in seqmonk. The genome view window can plot out sets of positions and export them as SVG.

This screenshot shows something similar, but not exactly the same.
this tool is very good, thank you very much.
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