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Old 11-02-2017, 07:22 AM   #1
JSThompson
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Location: Cambridge, UK

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Default Issues installing Pindel from git

I'm having issues with installing Pindel from git, even when using the dedicated htslib from git instead of the one packaged from samtools.

The error message I'm getting can be found here:

https://www.biostars.org/p/281192/

Does anyone have any advice on this issue?
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Old 11-03-2017, 10:38 AM   #2
JSThompson
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Turned out to be an issue with a recent change to htslib where hts_drand48() was defined for C, but not for C++. The fix should be implemented in htslib soon, or the ksort.h file in htslib can be altered as shown in the link above.
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