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Old 11-04-2017, 09:40 AM   #1
Sofia Silva
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Location: Portugal

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Exclamation Scripts to download genes

Hello everyone!

I'm new here as well as in bioinformatics area.
I need to download a loooot of genes from a specific website using a script but my coding background is limited.
I would be really glad if some of you could help me with this.

Thank you for your attention,
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Old 11-06-2017, 02:59 AM   #2
sghignone
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which is the "specific website" you're talking about? without this information it's pretty hard to provide you with useful hints.
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Old 11-06-2017, 09:28 AM   #3
Sofia Silva
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I'm so sorry!
It's the gene ontology site: http://www.geneontology.org/
There, using specific terms (such as "virus receptor activity") it's possible to find all the genes associated with that term.

So, i'll have a list of terms to use (let's say about 20 terms or something) and i'll want to download all the genes associated with them.
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Old 11-06-2017, 09:36 AM   #4
GenoMax
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Using your example you can see that you are able to custom download the genes (blue button at the top right of the page). Add any additional fields you want.
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Old 11-19-2017, 02:27 PM   #5
Sofia Silva
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OMG... don't know how i didn't notice that!
Thank you so much!!
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