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Old 02-11-2009, 12:49 PM   #1
Junior Member
Location: baltimore

Join Date: Feb 2009
Posts: 9
Default chord->getLength Newbler error


I'm trying to run a Newbler assembly on a sample that is predicted to be ~8-9Mb but get the following error message:

Error: An internal error has occurred in the computation.
Assertion: chord->getLength() > 10
Location: 'bool ChordMatrix::checkAddChordColumn(Chord*, int)'
Please report this error to your customer support representative.

I was wondering if this rings a bell to anybody and if you knew how to fix it.

veena is offline   Reply With Quote
Old 02-18-2009, 03:15 PM   #2
Senior Member
Location: The University of Melbourne, AUSTRALIA

Join Date: Apr 2008
Posts: 275

I experienced this error a lot when using FASTA file input rather than SFF files. This was with Version 1 of Newbler. If you can get Version 2 of Newbler, try that.
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Old 07-23-2010, 10:32 AM   #3
Location: Michigan

Join Date: Mar 2009
Posts: 17

I still get this error with FASTA files in 2.3, no real help from Roche when I contacted them.
plattsa is offline   Reply With Quote

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