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03-27-2017, 09:34 AM
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Junior Member
Location: IN my house Join Date: Mar 2017
Posts: 1
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Firebrowse Methylation Preprocessing CutOff
Hi All,
At the end of this website : https://confluence.broadinstitute.or...n+Preprocessor At the Clustering section is stated that "The default cutoff is .2, but it can be tuned based on the desired output file size". I would want to tune this cutoff programatically, but I don't find how this can be achieved. I am using Python and I have : rnaSEQ = firebrowse.Archives().StandardData(cohort='COADREAD',data_type='Methylation_Preprocess') I reviewed all the parameters of StandardData action, but I don't find this cutoff parameter. Best regards, |
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| fire browse, methylation, pipeline, preprocessing |
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