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Old 06-21-2017, 09:09 AM   #1
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Location: Northern Ireland

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Default Samtools mac install problems

Hello - relative bioinformatics newbie here, so apologies in advance if these are stupid questions!

I'm trying to install Samtools (tried both 1.4.1 and 1.5) on Mac OS X 10.11.6.

I seem to get through the install process (using ./configure, make and make install without any error messages, but it seems to me that the resulting Samtools folder only contains a limited selection of the executables that should be available:

ace2sam** maq2sam-short**** wgsim*** md5fa* plot-bamstats* samtools**** maq2sam-long* md5sum-lite*****

For example, faidx is not there. Am I missing something here - is there another folder with the rest of the executables?

Thanks in advance!
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Old 06-21-2017, 09:22 AM   #2
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Location: East Coast USA

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I answered your identical question on Biostars: already.
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install, mac, os x, samtools

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