Hi Everybody,
I am looking for the best strategy for finding gene fusion events in some human resequencing RNASeq paired-end reads.
At present there is one package I am aware of called DeFuse, however I think that tools such as BreakDancer, Breakway and Hydra-SV would be suitable for this task with some downstream operations.
I have my reads mapped to HG18 with novoalign in BAM format. Some pointers from people with experience would be great.
Thanks
I am looking for the best strategy for finding gene fusion events in some human resequencing RNASeq paired-end reads.
At present there is one package I am aware of called DeFuse, however I think that tools such as BreakDancer, Breakway and Hydra-SV would be suitable for this task with some downstream operations.
I have my reads mapped to HG18 with novoalign in BAM format. Some pointers from people with experience would be great.
Thanks
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