Hi,
From the processed dataset from this nature paper. I found more than 2000 genes RPKM=-1, some of them are only present in one genotype, most of them are across 18 genotypes. And Is it a problem for DESeq? Cause I'm planing to use one genotype as standard to calculate fold change across 18 genotypes. I'm not sure if the -1 would be a problem. Thanks a lot!
This is the link for this dataset.
From the processed dataset from this nature paper. I found more than 2000 genes RPKM=-1, some of them are only present in one genotype, most of them are across 18 genotypes. And Is it a problem for DESeq? Cause I'm planing to use one genotype as standard to calculate fold change across 18 genotypes. I'm not sure if the -1 would be a problem. Thanks a lot!
This is the link for this dataset.
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