Poblem: New application with Cytoscape

[asma]

Hi everybody,

I've recently been using Cytoscape 3 to develop a new Application. I'm a beginner. I have to integrate "a biclustering algorithm for microarray data analysis" under Cytoscape. This algorithm work correctly under eclipse but when i added it to cytoscape, it can't be executed.

I've been creating a simple /Bundle Cytocape application (Hello World) and i've adding my classes but it can't work.
What I must do to adapt this application to cytoscape? should I add same instructions? how to approach to solve this problem?

PS: this alogrithm takes as input : (1) text file: The microarray dataset, (2) The threshold of the average correspondence (3) the threshold of the average spearman’s rho. Finally, it generates an OutputFile.txt (the result file) that contains a set of bicluster.

Regards

[TiborNagy]

It is hard to tell, but I think you need to read some tutorial on Cytoscape development:

http://wiki.cytoscape.org/Cytoscape_Plugin_Tutorial

[asma]

thank you TiborNagy,
I already tried this code and it worked correctly