Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
This topic is closed.
X
This is a sticky topic.
X
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • #16
    A wonderful work!!!
    thank you

    Comment


    • #17
      comparisons

      Where can I find the results that Nix suggested earlier, same sample sequences tested with different peak finding software?
      Napoleon Bonaparte: "Money, money, money!", bioinformatician: "Format, format, format, ..."

      Comment


      • #18
        Here's the thread to the ChIP Seq Challenge http://seqanswers.com/forums/showthread.php?t=1039

        Comment


        • #19
          Hi All,

          We recently completed first chip-seq run in our laboratory. We could find a few good peaks with MACS. What I want to do is find the distribution of the distances of all the genes that are closes to the peaks on their respective 5' and 3' end. Is there a simple way to do it. Naturally I have the genomic coordinates. If anybody has done this before, it will help most helpful else I will try to write a tool to get it done.

          regards
          Sameet Mehta (Ph.D.),
          Visiting Fellow,
          National Cancer Insitute,
          Bethesda,
          US.

          Comment


          • #20
            You might want to check out the following tool, which has a built in "nearest gene finder". http://havoc.genomecenter.ucdavis.ed...in/chipseq.cgi

            Cheers,
            Lizzy

            Comment


            • #21
              Thank you Lizzy, I think this will solve my problem.
              Sameet Mehta (Ph.D.),
              Visiting Fellow,
              National Cancer Insitute,
              Bethesda,
              US.

              Comment

              Latest Articles

              Collapse

              • seqadmin
                Strategies for Sequencing Challenging Samples
                by seqadmin


                Despite advancements in sequencing platforms and related sample preparation technologies, certain sample types continue to present significant challenges that can compromise sequencing results. Pedro Echave, Senior Manager of the Global Business Segment at Revvity, explained that the success of a sequencing experiment ultimately depends on the amount and integrity of the nucleic acid template (RNA or DNA) obtained from a sample. “The better the quality of the nucleic acid isolated...
                03-22-2024, 06:39 AM
              • seqadmin
                Techniques and Challenges in Conservation Genomics
                by seqadmin



                The field of conservation genomics centers on applying genomics technologies in support of conservation efforts and the preservation of biodiversity. This article features interviews with two researchers who showcase their innovative work and highlight the current state and future of conservation genomics.

                Avian Conservation
                Matthew DeSaix, a recent doctoral graduate from Kristen Ruegg’s lab at The University of Colorado, shared that most of his research...
                03-08-2024, 10:41 AM

              ad_right_rmr

              Collapse

              News

              Collapse

              Topics Statistics Last Post
              Started by seqadmin, Yesterday, 06:37 PM
              0 responses
              11 views
              0 likes
              Last Post seqadmin  
              Started by seqadmin, Yesterday, 06:07 PM
              0 responses
              10 views
              0 likes
              Last Post seqadmin  
              Started by seqadmin, 03-22-2024, 10:03 AM
              0 responses
              51 views
              0 likes
              Last Post seqadmin  
              Started by seqadmin, 03-21-2024, 07:32 AM
              0 responses
              67 views
              0 likes
              Last Post seqadmin  
              Working...
              X