Hi All,
I have aligned RNA Seq data for four healthy controls and four patients, in bam format. Then I made a table for RPKM for all the genes. Now how do I quickly identify and visualize those differentially expressed genes in patients? In other words, how to identify which genes are expressed more in patients but not in healthy control? I've tried SAM (significant analysis for microarray ) but no good. Any suggestions? Thanks!
I have aligned RNA Seq data for four healthy controls and four patients, in bam format. Then I made a table for RPKM for all the genes. Now how do I quickly identify and visualize those differentially expressed genes in patients? In other words, how to identify which genes are expressed more in patients but not in healthy control? I've tried SAM (significant analysis for microarray ) but no good. Any suggestions? Thanks!
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