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Old 12-23-2009, 08:28 PM   #1
riocean
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Unhappy TopHat's coverage.wig

Hi, everyone, i'm just a newer to TopHat, and regarding the coverage.wig file, what does the 3th column --- "dataValues"--- really means?
reads count?
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Old 12-24-2009, 11:04 PM   #2
Xi Wang
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it is the number of reads that cover that site. if the nearby sites have the same value, then they are merged.
For downstream analysis, we can use another program called cufflink for RPKM.
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Old 12-27-2009, 11:49 PM   #3
riocean
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thanks very much!
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