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Old 03-29-2013, 07:12 AM   #1
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Location: London

Join Date: May 2012
Posts: 9
Default create list of individual variant profiles from merged VCF

I have a VCF that contains data for 300 samples, in 300 columns. I would like to create a list of variants by sample. What's the easiest way to convert a VCF to look like
Sample1:                  1:156084613              1:116243719 
person 1                   1/0                      0/0
person 2                   1/1                      1/0
I imagine you can do this in perl, but it's beyond me.
pepsimax is offline   Reply With Quote
Old 03-31-2013, 03:07 AM   #2
Location: Oxford, UK

Join Date: Nov 2011
Posts: 17

If you could post a few lines of your VCF on here or email them to me I can have a go at helping you out.

davidblaney is offline   Reply With Quote


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