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  • sra-lite to fastq problem: no output

    Hi all,

    I've downloaded sra-lite files, and am trying to convert them to .fastq using fastq-dump (version 2.0.1, which I compiled from source). Everything runs with no errors, but I simply get no output. Has anyone had this problem?

    For example, if I'm in this directory:
    [pickrell@spudling40 SRR000711]$ ls -l
    total 239M
    -rw-rw-r-- 1 pickrell pickrell 239M Apr 25 2008 SRR000711.lite.sra

    Then I run

    fastq-dump -A SRR000711 -D SRR000711.lite.sra -O .

    It runs for about five minutes, then stops, but without creating any output. Any suggestions?

    Thanks,

    Joe

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