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Old 07-07-2013, 08:03 PM   #1
OllyBolly
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Location: Australia

Join Date: Jan 2011
Posts: 7
Default MEGAN view alignment problems

In the past I've been able to select a node in a MEGAN taxonomy tree, and view alignments of the reads in that node to the better BLAST hits. However, I can no longer do this and am unsure why.

I can still select the node, choose view alignment, and select the reference sequence with which to compare my reads. For some reason the graphic display does not show (the window indicates that I am looking at an alignment, but nothing shows).

Has anybody else had this issue? Am I missing a setting?

I've had the same issue with version 4, 5, PC and Mac.

Cheers.
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Old 07-07-2013, 10:54 PM   #2
rhinoceros
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Location: sub-surface moon base

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Default

There was a bad Java update from Apple a few weeks ago.

If

Code:
java -version
Shows xM4508 instead of xM4509, proceed here..
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Old 07-07-2013, 11:29 PM   #3
OllyBolly
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Default Java issue MEGAN

Thanks Rhinoceros. Do you by chance have any advice regarding the PC version of MEGAN? Cheers.
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