Hello,
What is the difference between lower case vs upper case letters are in the maq viewer?
From the maq manual, for the command maq cns2fq it states "bases in lower case are essentially repeats or do not have sufficient coverage; bases in upper case indicate regions where SNPs can be reliably called"
Is this valid for the viewer as well?
Thanks!
Anamika
What is the difference between lower case vs upper case letters are in the maq viewer?
From the maq manual, for the command maq cns2fq it states "bases in lower case are essentially repeats or do not have sufficient coverage; bases in upper case indicate regions where SNPs can be reliably called"
Is this valid for the viewer as well?
Thanks!
Anamika
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