Hi all, I'm getting an error using CREST software to call SV. When I run CREST.pl, it throws an exception and exits.
Does anyone know why and how to avoid it?
Error message:
Does anyone know why and how to avoid it?
Error message:
Code:
------------- EXCEPTION: Bio::Root::Exception ------------- MSG: Unable to sort hits: Can't call method "end" on an undefined value at /home/work/lib/perl5/site_perl/5.8.8/Bio/Search/SearchUtils.pm line 4 STACK: Error::throw STACK: Bio::Root::Root::throw /home/work/lib/perl5/site_perl/5.8.8/Bio/Root/Root.pm:368 STACK: Bio::Search::Result::ResultI::sort_hits /home/work/lib/perl5/site_perl/5.8.8/Bio/Search/Result/ResultI.pm:180 STACK: Mapper::select_target /SVExtTools.pm:152 STACK: Mapper::run /bin/SVExtTools.pm:139 STACK: main::detect_SV /bin/CREST.pl:613 STACK: main::detect_range_SVs /bin/CREST.pl:479 STACK: /bin/CREST.pl:315 -----------------------------------------------------------
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