Hi can anybody suggest good assembly programs, other than Newbler and MIRA, which can use .sff files directly as an input file, not fasta.
Also, I have generated an .ace file from newbler which is not fully compatible with consed (I can open the file in consed but for some reason the contig number look different). Could anybody suggest good programs, which I can use to finish a 454 generated genome? something that will allow me to view the scaffolds and join or break where needed.
I've tried consed and staden, any others would be greatly appreciated!!
Thanks in advance!
Raj
Also, I have generated an .ace file from newbler which is not fully compatible with consed (I can open the file in consed but for some reason the contig number look different). Could anybody suggest good programs, which I can use to finish a 454 generated genome? something that will allow me to view the scaffolds and join or break where needed.
I've tried consed and staden, any others would be greatly appreciated!!
Thanks in advance!
Raj
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