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Old 12-04-2012, 10:52 PM   #1
TopNattapat
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Default What does "non-redundant genomic sequence dataset" mean?

Hello,

I have read the paper "Identification of SNP and SSR markers in
eggplant using RAD tag sequencing"

http://www.biomedcentral.com/1471-2164/12/304

and I don't understand the meaning of "non-redundant genomic
sequence dataset" in abstract

Could you help me, please?

Thank you very much for your help
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Old 12-05-2012, 03:28 AM   #2
jimmybee
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A non-redundant dataset is one where a single entry isn't repeated. For example, you are searching for something in a database and you find the same thing but in 2 different entries. That would mean there is redundancy within the dataset. A non-redundant database would be where there is only one entry
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Old 07-21-2017, 06:43 AM   #3
maryam p
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do you know about "custom-made perl script" in RNA Seq analysis? is it a software?
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Old 07-21-2017, 07:22 AM   #4
GenoMax
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Quote:
Originally Posted by maryam p View Post
do you know about "custom-made perl script" in RNA Seq analysis? is it a software?
Not sure what reference this question is in but generally a perl script is a program written in Perl (a text processing programming language) for a specific purpose (custom part).
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Old 07-21-2017, 07:41 AM   #5
Brian Bushnell
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Quote:
Originally Posted by maryam p View Post
do you know about "custom-made perl script" in RNA Seq analysis? is it a software?
That seems to be completely unrelated to this thread. In such situations, I suggest you create a new post rather than adding to an old and irrelevant thread.
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Old 07-21-2017, 09:06 AM   #6
maryam p
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Thanks for your reply in a paper: https://www.ncbi.nlm.nih.gov/pmc/art...e.0129422.s001
they have written:
"GC counts of transcripts were determined using a custom-made perl script".
I couldnt underestand diffinition of "custom-made perl script"
many thanks
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