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Old 11-22-2013, 12:02 PM   #1
Junior Member
Location: Kingsville, TX

Join Date: Apr 2013
Posts: 6
Default Looking for sample MiSeq output

Hello All,

I am going to receive data from a MiSeq run consisting of 300 multiplexed small amplicons in a week or so. This will be my first time analyzing NextGeneration sequencing data, so I am trying to learn how to use some of the necessary programs now. Specifically, I will be using FLASH, FastQC, PrinSeq, and jMHC.

Does anyone know of any sample datasets that I can access online in order to start playing around with these programs? Ideally, the dataset would consist of a bunch of multiplexed samples with 150bp paired end reads. Thanks.
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Old 11-22-2013, 02:10 PM   #2
Location: Portugal

Join Date: Apr 2011
Posts: 50

Open an account in MyIllumina, and in Basespace i think you can download some files of different projects. p ex. if you search for 16S protocol, there's a link to a Project in Basespace.
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Old 11-22-2013, 08:01 PM   #3
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Location: Adelaide, Australia

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Posts: 119

NCBI SRA database
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