Dear all,
I have installed Samtools, Bowtie and TopHat as per the instructions. All of those tools work. Then I downloaded the Boost libraries and installed using bjam build. I was able to configure cufflinks 1.3.0 . The boost library version I have is 1.49.0. I tried to run the make on cufflinks and I am getting an error as follows
libcufflinks.a(assemble.o): In function `boost::thread_specific_ptr<std::basic_string<char, std::char_traits<char>, std::allocator<char> > >erator->() const':
/usr/include/boost/thread/tss.hpp:84: undefined reference to `boost::detail::get_tss_data(void const*)'
libcufflinks.a(assemble.o): In function `boost::thread_specific_ptr<std::basic_string<char, std::char_traits<char>, std::allocator<char> > >::get() const':
/usr/include/boost/thread/tss.hpp:84: undefined reference to `boost::detail::get_tss_data(void const*)'
/usr/include/boost/thread/tss.hpp:84: undefined reference to `boost::detail::get_tss_data(void const*)'
/usr/include/boost/thread/tss.hpp:84: undefined reference to `boost::detail::get_tss_data(void const*)'
/usr/include/boost/thread/tss.hpp:84: undefined reference to `boost::detail::get_tss_data(void const*)'
libcufflinks.a(assemble.o):/usr/include/boost/thread/tss.hpp:84: more undefined references to `boost::detail::get_tss_data(void const*)'
Is there a way around it. I need to download Cufflinks. I ama using a 64bit Ubuntu platform.
Any solutions/help is really appreciated.
Thanks,
Himanshu Sharma.
I have installed Samtools, Bowtie and TopHat as per the instructions. All of those tools work. Then I downloaded the Boost libraries and installed using bjam build. I was able to configure cufflinks 1.3.0 . The boost library version I have is 1.49.0. I tried to run the make on cufflinks and I am getting an error as follows
libcufflinks.a(assemble.o): In function `boost::thread_specific_ptr<std::basic_string<char, std::char_traits<char>, std::allocator<char> > >erator->() const':
/usr/include/boost/thread/tss.hpp:84: undefined reference to `boost::detail::get_tss_data(void const*)'
libcufflinks.a(assemble.o): In function `boost::thread_specific_ptr<std::basic_string<char, std::char_traits<char>, std::allocator<char> > >::get() const':
/usr/include/boost/thread/tss.hpp:84: undefined reference to `boost::detail::get_tss_data(void const*)'
/usr/include/boost/thread/tss.hpp:84: undefined reference to `boost::detail::get_tss_data(void const*)'
/usr/include/boost/thread/tss.hpp:84: undefined reference to `boost::detail::get_tss_data(void const*)'
/usr/include/boost/thread/tss.hpp:84: undefined reference to `boost::detail::get_tss_data(void const*)'
libcufflinks.a(assemble.o):/usr/include/boost/thread/tss.hpp:84: more undefined references to `boost::detail::get_tss_data(void const*)'
Is there a way around it. I need to download Cufflinks. I ama using a 64bit Ubuntu platform.
Any solutions/help is really appreciated.
Thanks,
Himanshu Sharma.
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