Hi folks:
I am trying to do a de novo assembly. The pair read length is around 100bp, we have around 600 million reads. The estimated size of the genome is 3Gb. Can anyone give me some suggestions on which specific de novo assembly software best fit to this scale and is there an estimation equation to calculate how long it could take?
Many thanks!
I am trying to do a de novo assembly. The pair read length is around 100bp, we have around 600 million reads. The estimated size of the genome is 3Gb. Can anyone give me some suggestions on which specific de novo assembly software best fit to this scale and is there an estimation equation to calculate how long it could take?
Many thanks!
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