SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
Looking to find number overlapping sequences between fastq files jme Bioinformatics 2 01-17-2012 10:16 AM
confused by all the 1000 Genomes fastq files efoss Bioinformatics 3 10-11-2011 07:43 AM
How to find the non-mapped regions against a reference genome? rubyb Bioinformatics 2 06-28-2011 07:00 AM
What is the reference sequence? ( can I find it in a .bai index?) keebs42 Bioinformatics 5 07-13-2010 01:22 PM
using BWA to align SOLiD fastq files from 1000 Genomes tgenahmet Bioinformatics 1 10-15-2009 06:19 PM

Reply
 
Thread Tools
Old 09-08-2011, 09:57 PM   #1
gvivek
Junior Member
 
Location: Bengaluru

Join Date: Mar 2011
Posts: 3
Default Where can I find FASTQ files along with reference genomes for various species?

Please could anyone direct me to sources (ftp or otherwise) where I could find a number of FASTQ files pertaining to various organisms along with the links for the corresponding reference genome sequences?
gvivek is offline   Reply With Quote
Old 09-09-2011, 04:30 AM   #2
GenoMax
Senior Member
 
Location: East Coast USA

Join Date: Feb 2008
Posts: 7,080
Default

You can obtain sequences in fastq format from short sequence read archive at NCBI (http://www.ncbi.nlm.nih.gov/sra), GEO http://www.ncbi.nlm.nih.gov/geo/ (search for "high throughput sequencing"[Platform Technology Type]) or European nucleotide archive (http://www.ebi.ac.uk/ena/home). You can find the reference genomes at NCBI.

Last edited by GenoMax; 09-09-2011 at 04:34 AM.
GenoMax is offline   Reply With Quote
Reply

Tags
fasta, fastq, ngs data

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 08:24 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2021, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO