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Old 12-08-2011, 10:21 PM   #1
Location: Japan

Join Date: Mar 2011
Posts: 11
Default RNA-seq analysis

Hi All,

I'm new to RNA-seq analysis,I've RNA-seq data for different time points (time course experiment) and i would like to analyze it to get differentially expressed genes,i have table with counts for each gene at each time point,what is the most suitable tool or R package to use for getting differentially expressed genes??

Thank you in advance
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Old 12-09-2011, 03:06 AM   #2
Location: Croatia

Join Date: Sep 2010
Posts: 22

In Bioconductor the most highly used packages are DESeq and EdgeR.
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