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10-02-2012, 10:37 AM
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#1 |
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Senior Member
Location: Pittsburgh Join Date: Feb 2010
Posts: 151
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annotation for viral genome
I am working on chipseq data for virus and wonder is there a tool to annotate the genome. I have FAStq file as well as NCBI accession no which will have all annottaions. Doing mannual may add errors and time consuming so I am trying to find if there is smart tool available out. Once I have chip tag enriched I can map the genome reggions back to their annottaion.
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10-07-2012, 12:10 AM
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#2 |
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Senior Member
Location: The University of Melbourne, AUSTRALIA Join Date: Apr 2008
Posts: 275
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Is the virus assembled into a contiguous sequence?
Is it an accession number for the sequence, or the short reads? |
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10-07-2012, 10:01 PM
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#3 |
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Senior Member
Location: Pittsburgh Join Date: Feb 2010
Posts: 151
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annotation for viral genome
It has NCBI accession number.
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10-07-2012, 10:18 PM
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#4 | |
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Senior Member
Location: The University of Melbourne, AUSTRALIA Join Date: Apr 2008
Posts: 275
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Quote:
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