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05-19-2013, 06:58 PM
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#1 |
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Junior Member
Location: Malaysia Join Date: May 2013
Posts: 1
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Gene based abundance comparison in two metagenomics dataset
Hi all,
I am trying to compare spesific gene abundance from two assembled metagenomics datasets. Does scaffold coverage calculated for every scaffold containing the gene enough to make the data comparable? |
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10-24-2013, 09:09 PM
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#2 |
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Junior Member
Location: nanning of china Join Date: Dec 2011
Posts: 4
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I want to know that too
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10-24-2013, 11:56 PM
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#3 |
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Senior Member
Location: sub-surface moon base Join Date: Apr 2013
Posts: 372
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If the sequenced samples had similar DNA concentration and are expected to have similar species abundance and the metagenomic coverage is similar, then maybe. Otherwise, probably not.
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