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SNPSVM : An accurate, machine-learning based variant caller brofallon Bioinformatics 8 12-21-2012 09:46 AM

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Old 06-17-2013, 09:41 AM   #1
Location: Ireland

Join Date: Sep 2011
Posts: 86
Default Is anyone using SNPSVM?

Hi, I just came across the paper on SNPSVM in Bioinformatics. It was showing up as one of the most-read articles this month, and it seems to be claiming a significantly better sensitivity/specificity tradeoff for SNP calling than samtools/UnifiedGenotyper.

Is anyone else using it? I'm trying it out here and I'm getting significantly fewer SNP calls with it than with UG. Not sure what to make of it just yet.
Rocketknight is offline   Reply With Quote

snpsvm, unifiedgenotyper, variant calling

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