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SNPSVM : An accurate, machine-learning based variant caller brofallon Bioinformatics 8 12-21-2012 09:46 AM

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Old 06-17-2013, 09:41 AM   #1
Rocketknight
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Location: Ireland

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Default Is anyone using SNPSVM?

Hi, I just came across the paper on SNPSVM in Bioinformatics. It was showing up as one of the most-read articles this month, and it seems to be claiming a significantly better sensitivity/specificity tradeoff for SNP calling than samtools/UnifiedGenotyper.

Is anyone else using it? I'm trying it out here and I'm getting significantly fewer SNP calls with it than with UG. Not sure what to make of it just yet.
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