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09-04-2015, 12:48 PM
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#1 |
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Member
Location: Baton Rouge, Louisiana Join Date: Jun 2011
Posts: 11
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Sorting VCFs from INFO field
VCFs have an INFO column that contains many sub-categories, depending on the annotations available at the time of calling. Is there a method of sorting VCFs using the sub field info? This would seem like powerful use of the format. If you know of anything or want to do the coding yourself, let me know please!
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09-04-2015, 01:33 PM
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#2 |
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Senior Member
Location: France Join Date: Apr 2010
Posts: 143
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I wrote a tool to sort a VCF on the INFO field https://github.com/lindenb/jvarkit/wiki/SortVCFOnInfo
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