SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
E-Values calculation (MEME) anahochmanova Bioinformatics 0 05-21-2015 12:17 AM
MEME for large datatset Ashwini M Bioinformatics 5 10-22-2013 03:58 AM
Motif finding using MEME sphil Bioinformatics 2 07-02-2013 04:15 AM
Filtering MEME sphil Bioinformatics 0 06-12-2013 05:07 AM
MEME parameters gene_x Bioinformatics 2 04-11-2013 07:07 PM

Reply
 
Thread Tools
Old 01-30-2016, 06:00 AM   #1
yu_chem
Member
 
Location: Japan

Join Date: Mar 2015
Posts: 23
Default E-value of MEME

Hello everyone,

Could you tell me about the calculation formula of E-value?
I could not find the calculation formula for E-value of MEME-ChIP (motif-based sequence analysis tools).
I checked the papers from MEME community and web sites. but I could not find.

Is its formula secret? I think that it's unlikely.
However If So, How do you evaluate the value for research?

Is it correct that everyone think the value is calculated by the length of the motif,the number of sequences containing the motif and homology of sequence compared with the motif.

I want to know as fast as possible but I have no parson teaching me it in my lab. Maybe If I ask other lab parson, I can not receive the reply in 2-3 days.

I hope you will help me
Best regards,
yu_chem is offline   Reply With Quote
Reply

Tags
e-value, meme

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 01:29 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2021, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO