Calculating free energy in batch

Marcos Lancia · 04-11-2017, 08:05 AM

Hi everyone, I´m working with 3'-UTR and 5'-UTR sequences of a group of genes of interest. I'd like to calculate their free Gibbs energy in batch. I found a web tool called MFOLD (http://unafold.rna.albany.edu/?q=mfold/rna-folding-form) but I can calculate free energy one by one. Anybody knows a tool for calculate free energy of 500 sequences in a row?

Thanks a lot,

fanli · 04-11-2017, 10:43 AM

You can download either MFold (http://unafold.rna.albany.edu/?q=mfold/download-mfold) or RNAfold (http://www.tbi.univie.ac.at/RNA/) as standalone software to do a batch.

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04-11-2017, 08:05 AM	#1
Marcos Lancia Member Location: Argentina Join Date: Apr 2015 Posts: 31	Calculating free energy in batch Hi everyone, I´m working with 3'-UTR and 5'-UTR sequences of a group of genes of interest. I'd like to calculate their free Gibbs energy in batch. I found a web tool called MFOLD (http://unafold.rna.albany.edu/?q=mfold/rna-folding-form) but I can calculate free energy one by one. Anybody knows a tool for calculate free energy of 500 sequences in a row? Thanks a lot,

04-11-2017, 10:43 AM	#2
fanli Senior Member Location: California Join Date: Jul 2014 Posts: 198	You can download either MFold (http://unafold.rna.albany.edu/?q=mfold/download-mfold) or RNAfold (http://www.tbi.univie.ac.at/RNA/) as standalone software to do a batch.