|
|
|
|
|||||||
Similar Threads
|
||||
| Thread | Thread Starter | Forum | Replies | Last Post |
| cufflinks GTF files incompatible with cuffmerge? | shurjo | Bioinformatics | 21 | 09-23-2013 05:47 PM |
| Cufflinks deconvolution warnings and fpkm_tracking files | gavin.oliver | Bioinformatics | 0 | 09-15-2011 02:59 AM |
| cufflinks accepting BAM files as input??? | PFS | Bioinformatics | 1 | 03-18-2011 12:56 PM |
| Fastx collapsed | frymor | Bioinformatics | 0 | 02-10-2011 02:36 AM |
| Identifying collapsed repeats and other misassemblies | coldturkey | 454 Pyrosequencing | 10 | 03-31-2009 02:13 AM |
 |
|
|
Thread Tools |
11-19-2010, 12:10 PM
|
#1 |
|
Member
Location: Durham Join Date: Oct 2010
Posts: 19
|
cufflinks with collapsed reads files
Hi Everyone,
We use cufflinks and tophat for our RNA-seq analysis. In our previous protocol, we use FASTX collapser to collapse reads with same sequence into one before doing alignments using bowtie/tophat. Does cufflinks consider such files when calculating FPKM? Thanks, Last edited by SongLi; 11-19-2010 at 12:20 PM. |
|
|
|
| Thread Tools | |
|
|
