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Old 04-07-2014, 06:23 AM   #1
Location: Germany

Join Date: Jun 2011
Posts: 24
Default Prokaryotic gene prediction from Contigs

Dear All,

I have a multi-fasta file of millions of contigs of bacteria which I would like to run gene prediction on it. Which program do you recommend. I would like to get the output in fasta format..

Thanks in advance,
mhadidi2002 is offline   Reply With Quote
Old 04-08-2014, 03:56 AM   #2
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Location: Budapest

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I have used RAST server to annotate bacterial sequences.
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Old 04-08-2014, 09:03 AM   #3
Peter (Biopython etc)
Location: Dundee, Scotland, UK

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Millions on contigs, for one bacteria

I would try Prokka
maubp is offline   Reply With Quote

gene prediction

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