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Old 05-16-2012, 01:29 PM   #1
mhadidi2002
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Location: Germany

Join Date: Jun 2011
Posts: 24
Default From RNA-seq reads / alignments to GFF files

Hello,

Does any one know how can I create gene models (GFF files) from RNA-seq reads or alignments ?

Inputs: RNA-seq reads and reference genome, I also have the bam mapping file produced from Tophat.
I used cufflinks, but I need another tool to compare between them.

Thank you in advance.

Bes
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