Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
Removing contaminants, transposons, dark matter before mapping blindtiger454 RNA Sequencing 0 02-08-2011 05:30 PM
software to cut adaptor tiffany081126 SOLiD 18 09-16-2010 11:44 PM
Dealing with 1-2bp of adaptor on reads... MattB Illumina/Solexa 2 11-08-2009 10:45 PM
Adaptor technologies comparison casual_seqs SOLiD 1 06-17-2009 02:44 AM
Adaptor technologies comparison casual_seqs Sample Prep / Library Generation 0 06-17-2009 02:21 AM

Thread Tools
Old 01-14-2010, 10:50 PM   #1
Junior Member
Location: water

Join Date: Jan 2010
Posts: 1
Default HELP,why consider reads with 5' adaptor as contaminants?

I got a report about small RNA analysis.It is a Solexa sequencing results.Every read is 35 nt.
It first filter reads without 3' adaptor and then filter reads with 5' adaptor.
Can anybody explain it?Why keep 3' but leave 5'?
Euler is offline   Reply With Quote

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 08:55 AM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO