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see below..
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Last edited by moritz1; 02-25-2016, 05:45 AM. -
You can install a local instance of galaxy that way you don't have to load it onto their server. -
I have tried Bpipe and it seems to work well. It takes some time to learn and get used to its way of doing things.
You can also write a shell script and I find it to be easier to understand..
But if your users will be doctors who might not have any unix experience. Anything that has a web interface will be much easier to use than unix environment..Comment
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I realize you are likely done with your thesis, so this information is for those who may stumble upon this thread. I would suggest to take a look at the latest development: NextflowWorkbench. Here's a preprint that discusses this new workflow system:
NextflowWorkbench: Reproducible and Reusable Workflows for Beginners and Experts
Jason P Kurs, Manuele Simi, Fabien Campagne
bioRxiv doi: http://dx.doi.org/10.1101/041236Comment
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The field of epigenetics has traditionally concentrated more on DNA and how changes like methylation and phosphorylation of histones impact gene expression and regulation. However, our increased understanding of RNA modifications and their importance in cellular processes has led to a rise in epitranscriptomics research. “Epitranscriptomics brings together the concepts of epigenetics and gene expression,” explained Adrien Leger, PhD, Principal Research Scientist on Modified Bases...Yesterday, 07:01 AM -
Proteins are often described as the workhorses of the cell, and identifying their sequences is key to understanding their role in biological processes and disease. Currently, the most common technique used to determine protein sequences is mass spectrometry. While still a valuable tool, mass spectrometry faces several limitations and requires a highly experienced scientist familiar with the equipment to operate it. Additionally, other proteomic methods, like affinity assays, are constrained...04-04-2024, 04:25 PM
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