Hello All,
I am looking to convert a Drosophila GFF file to the GTF format. I have not found a good program to do this. The one available uses Bioperl that is not loaded on my computer and seems to have bugs according to users of that script. However, It appears that the GFF to GTF conversion should be straight-forward. I would like to know which fields are to be added in the attributes column and what features are a must in order for Tophat and Cufflinks to work with the GTF. Any inputs will be appreciated.
Thanks
Abhijit
I am looking to convert a Drosophila GFF file to the GTF format. I have not found a good program to do this. The one available uses Bioperl that is not loaded on my computer and seems to have bugs according to users of that script. However, It appears that the GFF to GTF conversion should be straight-forward. I would like to know which fields are to be added in the attributes column and what features are a must in order for Tophat and Cufflinks to work with the GTF. Any inputs will be appreciated.
Thanks
Abhijit
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